head	1.3;
access;
symbols
	pkgsrc-2026Q2:1.3.0.38
	pkgsrc-2026Q2-base:1.3
	pkgsrc-2026Q1:1.3.0.36
	pkgsrc-2026Q1-base:1.3
	pkgsrc-2025Q4:1.3.0.34
	pkgsrc-2025Q4-base:1.3
	pkgsrc-2025Q3:1.3.0.32
	pkgsrc-2025Q3-base:1.3
	pkgsrc-2025Q2:1.3.0.30
	pkgsrc-2025Q2-base:1.3
	pkgsrc-2025Q1:1.3.0.28
	pkgsrc-2025Q1-base:1.3
	pkgsrc-2024Q4:1.3.0.26
	pkgsrc-2024Q4-base:1.3
	pkgsrc-2024Q3:1.3.0.24
	pkgsrc-2024Q3-base:1.3
	pkgsrc-2024Q2:1.3.0.22
	pkgsrc-2024Q2-base:1.3
	pkgsrc-2024Q1:1.3.0.20
	pkgsrc-2024Q1-base:1.3
	pkgsrc-2023Q4:1.3.0.18
	pkgsrc-2023Q4-base:1.3
	pkgsrc-2023Q3:1.3.0.16
	pkgsrc-2023Q3-base:1.3
	pkgsrc-2023Q2:1.3.0.14
	pkgsrc-2023Q2-base:1.3
	pkgsrc-2023Q1:1.3.0.12
	pkgsrc-2023Q1-base:1.3
	pkgsrc-2022Q4:1.3.0.10
	pkgsrc-2022Q4-base:1.3
	pkgsrc-2022Q3:1.3.0.8
	pkgsrc-2022Q3-base:1.3
	pkgsrc-2022Q2:1.3.0.6
	pkgsrc-2022Q2-base:1.3
	pkgsrc-2022Q1:1.3.0.4
	pkgsrc-2022Q1-base:1.3
	pkgsrc-2021Q4:1.3.0.2
	pkgsrc-2021Q4-base:1.3
	pkgsrc-2021Q3:1.1.0.4
	pkgsrc-2021Q3-base:1.1
	pkgsrc-2021Q2:1.1.0.2
	pkgsrc-2021Q2-base:1.1;
locks; strict;
comment	@# @;


1.3
date	2021.10.26.10.03.37;	author nia;	state Exp;
branches;
next	1.2;
commitid	R64ULQLy8JYkZieD;

1.2
date	2021.10.07.13.19.41;	author nia;	state Exp;
branches;
next	1.1;
commitid	CQ422EVgQgYxGSbD;

1.1
date	2021.05.26.19.13.39;	author brook;	state Exp;
branches;
next	;
commitid	ThZoagNgKh24XGUC;


desc
@@


1.3
log
@biology: Replace RMD160 checksums with BLAKE2s checksums

All checksums have been double-checked against existing RMD160 and
SHA512 hashes
@
text
@$NetBSD: distinfo,v 1.2 2021/10/07 13:19:41 nia Exp $

BLAKE2s (beagle-5.2/beagle.21Apr21.304.jar) = 8dbefee22af24c5b843cb57daf68e17b0e918ce97a99da539d1440dfad304638
SHA512 (beagle-5.2/beagle.21Apr21.304.jar) = 78513bd054ee7a1aadeb27b5a6b10ca32e9ae81fe66fa2e459fe69d7eb1673018f92a071e6932037632c467f5464b15a234207d263d7f5cab518473096de3922
Size (beagle-5.2/beagle.21Apr21.304.jar) = 300845 bytes
BLAKE2s (beagle-5.2/bref3.21Apr21.304.jar) = 16daf97ad188123a9e44e005cac36a075cd8dbf927f29ac2e150cd907add9000
SHA512 (beagle-5.2/bref3.21Apr21.304.jar) = 76334fc41a59b685ea06b2b958f256c9f306c475e4c7ede1d3b9058bb22a3e22bd429aed44c399939db89c1bee0d3641922107e8a74d7c1034f1df5a4071007c
Size (beagle-5.2/bref3.21Apr21.304.jar) = 98572 bytes
BLAKE2s (beagle-5.2/test.21Apr21.304.vcf.gz) = 9d5bfe582f76d0ff26d8c648f8796760c2614dfe8e790bbc5c0536740a77f32c
SHA512 (beagle-5.2/test.21Apr21.304.vcf.gz) = 155f4f20e9e7aef4e7747d24c0cd1fade3776057663701399189c997e9f0ae01e4f7f899327968176a3203f19159fbfb6a9ef2542cd0d02701c3174af405664e
Size (beagle-5.2/test.21Apr21.304.vcf.gz) = 876514 bytes
@


1.2
log
@biology: Remove SHA1 hashes for distfiles
@
text
@d1 1
a1 1
$NetBSD: distinfo,v 1.1 2021/05/26 19:13:39 brook Exp $
d3 1
a3 1
RMD160 (beagle-5.2/beagle.21Apr21.304.jar) = d2f629a907a0e05d683509151efbe2428db5cd97
d6 1
a6 1
RMD160 (beagle-5.2/bref3.21Apr21.304.jar) = 5712ef61d801096370090848e765389dbce59796
d9 1
a9 1
RMD160 (beagle-5.2/test.21Apr21.304.vcf.gz) = db06387c9e03974d91395eaa9ad046db75f66cd2
@


1.1
log
@biology/beagle: added beagle 5.2

Introduction

Beagle is a software package for phasing genotypes and for imputing
ungenotyped markers. Beagle version 5.2 provides significantly faster
genotype phasing than version 5.1

Citation

If you use Beagle in a published analysis, please report the program
version and cite the appropriate article.

The Beagle 5.2 genotype imputation method is described in:

  B L Browning, Y Zhou, and S R Browning (2018). A one-penny imputed
  genome from next generation reference panels. Am J Hum Genet
  103(3):338-348. doi:10.1016/j.ajhg.2018.07.015

The most recent reference for Beagle's phasing method is:

  S R Browning and B L Browning (2007) Rapid and accurate haplotype
  phasing and missing data inference for whole genome association
  studies by use of localized haplotype clustering. Am J Hum Genet
  81:1084-1097. doi:10.1086/521987

This reference will be updated when the Beagle version 5 phasing
method is published.
@
text
@d1 1
a1 1
$NetBSD$
a2 1
SHA1 (beagle-5.2/beagle.21Apr21.304.jar) = 43eb2d4e175cc84d38b26a60abe0837a62cabac4
a5 1
SHA1 (beagle-5.2/bref3.21Apr21.304.jar) = 6dc52e9aa888f275ddfc70c8b42a2e853e3f8456
a8 1
SHA1 (beagle-5.2/test.21Apr21.304.vcf.gz) = b8100bc81218bdc379862d7a831350b2a1f1fbb4
@