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desc
@@


1.10
log
@biology/biolibc-tools: Update to 0.1.4.13

Updates for new libxtend API
@
text
@@@comment $NetBSD$
bin/blt
libexec/biolibc-tools/chrom-lens
libexec/biolibc-tools/deromanize
libexec/biolibc-tools/ensemblid2gene
libexec/biolibc-tools/extract-seq
libexec/biolibc-tools/fasta2seq
libexec/biolibc-tools/fastq-derep.sh
libexec/biolibc-tools/fastx-derep
libexec/biolibc-tools/fastx-stats
libexec/biolibc-tools/fastx2tsv
libexec/biolibc-tools/find-orfs
libexec/biolibc-tools/gff3-to-bed
libexec/biolibc-tools/uniq-seqs.awk
libexec/biolibc-tools/vcf-downsample
libexec/biolibc-tools/vcf-search
man/man1/blt-chrom-lens.1
man/man1/blt-deromanize.1
man/man1/blt-ensemblid2gene.1
man/man1/blt-extract-seq.1
man/man1/blt-fasta2seq.1
man/man1/blt-fastq-derep.sh.1
man/man1/blt-fastx-derep.1
man/man1/blt-fastx-stats.1
man/man1/blt-fastx2tsv.1
man/man1/blt-find-orfs.1
man/man1/blt-gff3-to-bed.1
man/man1/blt-vcf-downsample.1
man/man1/blt-vcf-search.1
man/man1/blt.1
@


1.9
log
@biology/biolibc-tools: Update to 0.1.4.9

Updates for biolibc GFF3 API changes
@
text
@@


1.8
log
@biology/biolibc-tools: Update to 0.1.4.6

Improvements to deromanize
Updates for libxtend API changes
@
text
@d13 1
a13 1
libexec/biolibc-tools/gff2bed
d27 1
a27 1
man/man1/blt-gff2bed.1
@


1.7
log
@biology/biolibc-tools: Update to 0.1.4.3

deromanize: Take optional input filename, improve robustness
@
text
@@


1.6
log
@biology/biolibc-tools: Update to 0.1.4.1

deromanize:

Check for NULL field to prevent crash in some situations
Take optional input file as second argument
@
text
@@


1.5
log
@biology/biolibc-tools: Update to 0.1.4

Add deromanize subcommand to convert Roman numeral chromosome IDs
fastx-stats: Report standard deviation for read length

Changes:    https://github.com/auerlab/biolibc-tools/releases
@
text
@@


1.4
log
@biology/biolibc-tools: Update to 0.1.3

Add vcf-downsample subcommand
Improvements to build system
extract-seq: Recurse to output subfeatures
Numerous other minor enhancements and fixes
Changes: https://github.com/auerlab/biolibc-tools/releases
@
text
@d4 1
d18 1
@


1.3
log
@biology/biolibc-tools: Update to 0.1.2

New fastx-stats and ensembl2gene subcommands
Minor updates for biolibc 0.2.2 API changes
Minor bug fixes and ennancements
@
text
@d14 1
d26 1
@


1.2
log
@biology/biolibc-tools: Update to 0.1.1

Make all programs subcommands of "blt"
Several new commands
Updates for evolving libxtend and biolibc APIs
Add --version flag
Numerous minor fixes and enhancements

Changes: https://github.com/auerlab/biolibc-tools/releases/tag/0.1.1
@
text
@d4 1
d9 1
d16 1
d21 1
@


1.1
log
@biology/biolibc-tools: import biolibc-tools-0.1.0.36

Biolibc-tools is a collection of simple, fast, and memory-efficient
programs for processing biological data.  These programs built on
biolibc are not complex enough to warrant separate projects.
@
text
@d2 9
a10 3
bin/fastq-derep.sh
bin/fastx-derep
bin/fastx2tsv
d12 11
a22 3
man/man1/fastq-derep.sh.1
man/man1/fastx-derep.1
man/man1/fastx2tsv.1
@