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locks; strict;
comment	@# @;


1.7
date	2024.10.11.22.36.15;	author bacon;	state Exp;
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1.6
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1.5
date	2022.02.26.23.08.43;	author bacon;	state Exp;
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1.4
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1.3
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desc
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1.7
log
@biology/htslib: Update to 1.21

Numerous bug fixes and enhancements since 1.17
Changes:        https://github.com/samtools/htslib/releases

Reported by:    portscout
@
text
@@@comment $NetBSD$
bin/annot-tsv
bin/bgzip
bin/htsfile
bin/tabix
include/htslib/bgzf.h
include/htslib/cram.h
include/htslib/faidx.h
include/htslib/hfile.h
include/htslib/hts.h
include/htslib/hts_defs.h
include/htslib/hts_endian.h
include/htslib/hts_expr.h
include/htslib/hts_log.h
include/htslib/hts_os.h
include/htslib/kbitset.h
include/htslib/kfunc.h
include/htslib/khash.h
include/htslib/khash_str2int.h
include/htslib/klist.h
include/htslib/knetfile.h
include/htslib/kroundup.h
include/htslib/kseq.h
include/htslib/ksort.h
include/htslib/kstring.h
include/htslib/regidx.h
include/htslib/sam.h
include/htslib/synced_bcf_reader.h
include/htslib/tbx.h
include/htslib/thread_pool.h
include/htslib/vcf.h
include/htslib/vcf_sweep.h
include/htslib/vcfutils.h
lib/libhts.a
lib/libhts.so
lib/libhts.so.${PKGVERSION}
lib/libhts.so.3
lib/pkgconfig/htslib.pc
man/man1/annot-tsv.1
man/man1/bgzip.1
man/man1/htsfile.1
man/man1/tabix.1
man/man5/faidx.5
man/man5/sam.5
man/man5/vcf.5
man/man7/htslib-s3-plugin.7
@


1.6
log
@biology/htslib: Update to 1.17

Numerous enhancements and fixes

Changes: https://github.com/samtools/htslib/releases
@
text
@d2 1
d39 1
@


1.5
log
@biology/htslib: Update to 1.15

Several minor enhancements and bug fixes
No API changes affecting existing packages
Changes: https://github.com/samtools/htslib/tags
@
text
@@


1.4
log
@biology/htslib: Update to 1.14

Numerous fixes and enhancements since 1.12

Changes: https://github.com/samtools/htslib/releases/tag/1.14
@
text
@@


1.3
log
@biology/htslib: Update to 1.12
biology/bcftools: Update to 1.12
biology/samtools: Update to 1.12

Numerous enhancements, performance improvements, and bug fixes since 1.10
Minimized pkgsrc patches in all three packages
Moved htslib to custom tarball since Github-generated distfiles are incomplete
@
text
@@


1.2
log
@biology/htslib: Upgrade to 1.10.2

Numerous enhancements and bug fixes since 1.9, including:

Elimited refernce file size limits
SAM header API
On-the-fly indexing
Improved Amazon S3 interface

This package contains a patch for recent libcurl not in the upstream release
@
text
@d12 1
d21 1
@


1.1
log
@biology/htslib: import htslib-1.8

HTSlib is an implementation of a unified C library for accessing common file
formats, such as SAM, CRAM, VCF, and BCF, used for high-throughput sequencing
data. It is the core library used by samtools and bcftools.
@
text
@d34 1
a34 1
lib/libhts.so.2
d42 1
@