head	1.4;
access;
symbols
	pkgsrc-2026Q2:1.4.0.20
	pkgsrc-2026Q2-base:1.4
	pkgsrc-2026Q1:1.4.0.18
	pkgsrc-2026Q1-base:1.4
	pkgsrc-2025Q4:1.4.0.16
	pkgsrc-2025Q4-base:1.4
	pkgsrc-2025Q3:1.4.0.14
	pkgsrc-2025Q3-base:1.4
	pkgsrc-2025Q2:1.4.0.12
	pkgsrc-2025Q2-base:1.4
	pkgsrc-2025Q1:1.4.0.10
	pkgsrc-2025Q1-base:1.4
	pkgsrc-2024Q4:1.4.0.8
	pkgsrc-2024Q4-base:1.4
	pkgsrc-2024Q3:1.4.0.6
	pkgsrc-2024Q3-base:1.4
	pkgsrc-2024Q2:1.4.0.4
	pkgsrc-2024Q2-base:1.4
	pkgsrc-2024Q1:1.4.0.2
	pkgsrc-2024Q1-base:1.4
	pkgsrc-2023Q4:1.1.0.2
	pkgsrc-2023Q4-base:1.1;
locks; strict;
comment	@# @;


1.4
date	2024.01.24.17.35.53;	author thor;	state Exp;
branches;
next	1.3;
commitid	bB9vHAtVTM5r8JVE;

1.3
date	2024.01.24.16.37.10;	author wiz;	state Exp;
branches;
next	1.2;
commitid	T3DNCqP2LNyhOIVE;

1.2
date	2024.01.17.15.53.51;	author thor;	state Exp;
branches;
next	1.1;
commitid	QgK2XfncWYj4NOUE;

1.1
date	2023.12.18.01.39.13;	author thor;	state Exp;
branches;
next	;
commitid	qWgqw3GQdb9K1TQE;


desc
@@


1.4
log
@biology/libpll: only works on Linux
@
text
@# $NetBSD: Makefile,v 1.3 2024/01/24 16:37:10 wiz Exp $

DISTNAME=	libpll-src-0.3.2
PKGNAME=	${DISTNAME:S/-src//}
PKGREVISION=	1
CATEGORIES=	biology
MASTER_SITES=	${MASTER_SITE_GITHUB:=xflouris/}
GITHUB_PROJECT=	libpll
GITHUB_RELEASE=	${PKGVERSION_NOREV}

MAINTAINER=	thomas.orgis@@uni-hamburg.de
HOMEPAGE=	https://github.com/xflouris/libpll/
COMMENT=	High-performance software library for phylogenetic analysis
LICENSE=	gnu-agpl-v3

GNU_CONFIGURE=	yes
USE_LIBTOOL=	yes

USE_TOOLS+=	bison flex

CONFIGURE_ARGS+=	--disable-pdfman

# This assumes availability of sysinfo(), linux-specific
# resource monitoring.
ONLY_FOR_PLATFORM=	Linux-*-*

.include "../../mk/bsd.pkg.mk"
@


1.3
log
@libpll: fix pkglint
@
text
@d1 1
a1 1
# $NetBSD: Makefile,v 1.2 2024/01/17 15:53:51 thor Exp $
d23 4
@


1.2
log
@libpll: Do not convert man page to PDF

This depends on locating ps2pdf and doesn't seem that useful. If you
want the man page, any man page, as PDF, you can run man -t | ps2pdf
yourself.
@
text
@d1 1
a1 1
# $NetBSD: Makefile,v 1.1 2023/12/18 01:39:13 thor Exp $
d4 1
a5 1
PKGNAME=	${DISTNAME:S/-src//}
d9 1
a9 1
GITHUB_RELEASE=	0.3.2
@


1.1
log
@biology/libpll: added package for PLL phylogenetic analysis

The aim of this project is to implement a versatile high-performance
software library for phylogenetic analysis. The library should serve
as a lower-level interface of PLL (Flouri et al. 2015) and should
have the following properties:

    open source code with an appropriate open source license.
    64-bit multi-threaded design that handles very large datasets.
    easy to use and well-documented.
    SIMD implementations of time-consuming parts.
    as fast or faster likelihood computations than RAxML (Stamatakis 2014).
    fast implementation of the site repeats algorithm (Kobert 2017).
    functions for tree visualization.
    bindings for Python.
    generic and clean design.
    Linux, Mac, and Microsoft Windows compatibility.
@
text
@d1 1
a1 1
# $NetBSD$
d4 1
d21 2
@