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locks; strict;
comment	@# @;


1.2
date	2018.05.22.21.37.29;	author bacon;	state Exp;
branches;
next	1.1;
commitid	bEArCpKSzJyI5lDA;

1.1
date	2018.04.27.20.28.28;	author bacon;	state Exp;
branches;
next	;
commitid	PIQsEyVN4kVJw7AA;


desc
@@


1.2
log
@biology/ncbi-blast+: Respect env to support PKGSRC_USE_RELRO

Fix a previous patch that hard-coded relro support by patching in pkgsrc
CFLAGS, CXXFLAGS, and LDFLAGS instead.

OK wiz@@
@
text
@$NetBSD$

# Missing RELRO for this one binary
# https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=820959

--- src/build-system/helpers/Makefile.run_with_lock.app.orig	2016-02-23 17:06:47.000000000 +0000
+++ src/build-system/helpers/Makefile.run_with_lock.app
@@@@ -6,9 +6,9 @@@@ CC          = $(CC_FOR_BUILD)
 CC_WRAPPER  =
 CXX_WRAPPER =
 CPP         = $(CPP_FOR_BUILD)
-CFLAGS      = $(CFLAGS_FOR_BUILD)
-CPPFLAGS    = $(CPPFLAGS_FOR_BUILD)
-LDFLAGS     = $(LDFLAGS_FOR_BUILD)
+CFLAGS      := $(CFLAGS_FOR_BUILD) $(CFLAGS)
+CPPFLAGS    := $(CPPFLAGS_FOR_BUILD) $(CPPFLAGS)
+LDFLAGS     := $(LDFLAGS_FOR_BUILD) $(LDFLAGS)
 LIBS        = $(C_LIBS)
 LINK        = $(CC)
 LINK_WRAPPER =
@


1.1
log
@biology/ncbi-blast+: import ncbi-blast+-2.7.1

The Basic Local Alignment Search Tool (BLAST) finds regions of local similarity
between sequences. The program compares nucleotide or protein sequences to
sequence databases and calculates the statistical significance of matches.
BLAST can be used to infer functional and evolutionary relationships between
sequences as well as help identify members of gene families.

OK wiz@@
@
text
@d6 1
a6 1
--- src/build-system/helpers/Makefile.run_with_lock.app.orig	2018-04-27 16:21:07.000000000 +0000
d15 3
a17 3
+CFLAGS      = $(CFLAGS_FOR_BUILD) -Wl,-z,relro,-z,now
+CPPFLAGS    = $(CPPFLAGS_FOR_BUILD) -Wl,-z,relro,-z,now
+LDFLAGS     = $(LDFLAGS_FOR_BUILD) -Wl,-z,relro,-z,now
@