head 1.5; access; symbols pkgsrc-2026Q2:1.5.0.10 pkgsrc-2026Q2-base:1.5 pkgsrc-2026Q1:1.5.0.8 pkgsrc-2026Q1-base:1.5 pkgsrc-2025Q4:1.5.0.6 pkgsrc-2025Q4-base:1.5 pkgsrc-2025Q3:1.5.0.4 pkgsrc-2025Q3-base:1.5 pkgsrc-2025Q2:1.5.0.2 pkgsrc-2025Q2-base:1.5 pkgsrc-2025Q1:1.4.0.10 pkgsrc-2025Q1-base:1.4 pkgsrc-2024Q4:1.4.0.8 pkgsrc-2024Q4-base:1.4 pkgsrc-2024Q3:1.4.0.6 pkgsrc-2024Q3-base:1.4 pkgsrc-2024Q2:1.4.0.4 pkgsrc-2024Q2-base:1.4 pkgsrc-2024Q1:1.4.0.2 pkgsrc-2024Q1-base:1.4 pkgsrc-2023Q4:1.3.0.10 pkgsrc-2023Q4-base:1.3 pkgsrc-2023Q3:1.3.0.8 pkgsrc-2023Q3-base:1.3 pkgsrc-2023Q2:1.3.0.6 pkgsrc-2023Q2-base:1.3 pkgsrc-2023Q1:1.3.0.4 pkgsrc-2023Q1-base:1.3 pkgsrc-2022Q4:1.3.0.2 pkgsrc-2022Q4-base:1.3 pkgsrc-2022Q3:1.2.0.12 pkgsrc-2022Q3-base:1.2 pkgsrc-2022Q2:1.2.0.10 pkgsrc-2022Q2-base:1.2 pkgsrc-2022Q1:1.2.0.8 pkgsrc-2022Q1-base:1.2 pkgsrc-2021Q4:1.2.0.6 pkgsrc-2021Q4-base:1.2 pkgsrc-2021Q3:1.2.0.4 pkgsrc-2021Q3-base:1.2 pkgsrc-2021Q2:1.2.0.2 pkgsrc-2021Q2-base:1.2 pkgsrc-2021Q1:1.1.0.2 pkgsrc-2021Q1-base:1.1; locks; strict; comment @# @; 1.5 date 2025.04.24.07.14.40; author wiz; state Exp; branches; next 1.4; commitid wenXqHnwavhw2hSF; 1.4 date 2024.02.10.13.07.54; author bacon; state Exp; branches; next 1.3; commitid 6EUdCCvK4axa6TXE; 1.3 date 2022.11.14.10.39.40; author wiz; state Exp; branches; next 1.2; commitid F5xOmsuMEt9vQE1E; 1.2 date 2021.05.21.11.38.13; author adam; state Exp; branches; next 1.1; commitid CQXmIEIRZfDJA0UC; 1.1 date 2021.02.08.01.52.24; author bacon; state Exp; branches; next ; commitid jSrv5kTOa0Y5DQGC; desc @@ 1.5 log @py-dnaio: adapt for setuptools 78 Bump PKGREVISION. @ text @@@comment $NetBSD$ ${PYSITELIB}/${WHEEL_INFODIR}/METADATA ${PYSITELIB}/${WHEEL_INFODIR}/RECORD ${PYSITELIB}/${WHEEL_INFODIR}/WHEEL ${PYSITELIB}/${WHEEL_INFODIR}/licenses/LICENSE ${PYSITELIB}/${WHEEL_INFODIR}/top_level.txt ${PYSITELIB}/dnaio/__init__.py ${PYSITELIB}/dnaio/__init__.pyc ${PYSITELIB}/dnaio/__init__.pyo ${PYSITELIB}/dnaio/_conversions.h ${PYSITELIB}/dnaio/_core.pyi ${PYSITELIB}/dnaio/_core.so ${PYSITELIB}/dnaio/_util.py ${PYSITELIB}/dnaio/_util.pyc ${PYSITELIB}/dnaio/_util.pyo ${PYSITELIB}/dnaio/_version.py ${PYSITELIB}/dnaio/_version.pyc ${PYSITELIB}/dnaio/_version.pyi ${PYSITELIB}/dnaio/_version.pyo ${PYSITELIB}/dnaio/ascii_check.h ${PYSITELIB}/dnaio/bam.h ${PYSITELIB}/dnaio/chunks.py ${PYSITELIB}/dnaio/chunks.pyc ${PYSITELIB}/dnaio/chunks.pyo ${PYSITELIB}/dnaio/exceptions.py ${PYSITELIB}/dnaio/exceptions.pyc ${PYSITELIB}/dnaio/exceptions.pyo ${PYSITELIB}/dnaio/interfaces.py ${PYSITELIB}/dnaio/interfaces.pyc ${PYSITELIB}/dnaio/interfaces.pyo ${PYSITELIB}/dnaio/multipleend.py ${PYSITELIB}/dnaio/multipleend.pyc ${PYSITELIB}/dnaio/multipleend.pyo ${PYSITELIB}/dnaio/pairedend.py ${PYSITELIB}/dnaio/pairedend.pyc ${PYSITELIB}/dnaio/pairedend.pyo ${PYSITELIB}/dnaio/py.typed ${PYSITELIB}/dnaio/readers.py ${PYSITELIB}/dnaio/readers.pyc ${PYSITELIB}/dnaio/readers.pyo ${PYSITELIB}/dnaio/singleend.py ${PYSITELIB}/dnaio/singleend.pyc ${PYSITELIB}/dnaio/singleend.pyo ${PYSITELIB}/dnaio/writers.py ${PYSITELIB}/dnaio/writers.pyc ${PYSITELIB}/dnaio/writers.pyo @ 1.4 log @biology/py-dnaio: Update to 1.2.0 Numerous bug fixes and enhancements since 0.9.1 Changes: https://github.com/marcelm/dnaio/tags @ text @a1 1 ${PYSITELIB}/${WHEEL_INFODIR}/LICENSE d5 1 @ 1.3 log @py-dnaio: update to 0.9.1. v0.9.1 (2022-08-01) ------------------- * :pr:`85`: macOS wheels are now also built as part of the release procedure. * :pr:`81`: API documentation improvements and minor code refactors for readability. v0.9.0 (2022-05-17) ------------------- * :pr:`79`: Added a `records_are_mates` function to be used for checking whether three or more records are mates of each other (by checking the ID). * :pr:`74`, :pr:`68`: Made FASTQ parsing faster by implementing the check for ASCII using SSE vector instructions. * :pr:`72`: Added a `tutorial `_. v0.8.0 (2022-03-26) ------------------- * Preliminary documentation is available at . * :pr:`53`: Renamed ``Sequence`` to `SequenceRecord`. The previous name is still available as an alias so that existing code will continue to work. * When reading a FASTQ file, there is now a check that ensures that all characters are ASCII. * Function ``record_names_match`` is deprecated, use `SequenceRecord.is_mate` instead. * Dropped Python 3.6 support as it is end-of-life. v0.7.1 (2022-01-26) ------------------- * :pr:`34`: Fix parsing of FASTA files that just contain a comment and no reads v0.7.0 (2022-01-17) ------------------- * @@rhpvorderman contributed many performance improvements in :pr:`15`, :pr:`17`, :pr:`18`, :pr:`20`, :pr:`21`, :pr:`22`, :pr:`23`. Reading and writing FASTQ files and reading of paired-end FASTQ files was sped up significantly. For example, reading uncompressed FASTQ is 50% faster (!) than before. * :pr:`28`: Windows support added v0.6.0 (2021-09-28) ------------------- * :pr:`12`: Improve FASTQ writing speed twofold (thanks to @@rhpvorderman) v0.5.2 (2021-09-07) ------------------- * :issue:`7`: Ignore a trailing "3" in the read id @ text @d2 5 a6 5 ${PYSITELIB}/${EGG_INFODIR}/PKG-INFO ${PYSITELIB}/${EGG_INFODIR}/SOURCES.txt ${PYSITELIB}/${EGG_INFODIR}/dependency_links.txt ${PYSITELIB}/${EGG_INFODIR}/requires.txt ${PYSITELIB}/${EGG_INFODIR}/top_level.txt d21 1 a21 1 ${PYSITELIB}/dnaio/ascii_check_sse2.h d31 3 @ 1.2 log @py-dnaio: updated to 0.5.1 v0.5.1 Add py.typed and distribute .pyi files @ text @d1 1 a1 1 @@comment $NetBSD: PLIST,v 1.1 2021/02/08 01:52:24 bacon Exp $ d10 1 d20 2 d28 6 d38 3 @ 1.1 log @biology/py-dnaio: import py38-dnaio-0.5.0 dnaio is a Python 3 library for fast input and output of FASTQ and FASTA files. It supports paired-end data in separate files, interleaved paired-end in a single file and compression using gzip, bzip, and xz. @ text @d1 1 a1 1 @@comment $NetBSD$ d8 1 d10 1 a10 13 ${PYSITELIB}/dnaio/__init__.pyc ${PYSITELIB}/dnaio/_util.pyo ${PYSITELIB}/dnaio/_util.pyc ${PYSITELIB}/dnaio/_version.pyo ${PYSITELIB}/dnaio/_version.pyc ${PYSITELIB}/dnaio/chunks.pyo ${PYSITELIB}/dnaio/chunks.pyc ${PYSITELIB}/dnaio/exceptions.pyo ${PYSITELIB}/dnaio/exceptions.pyc ${PYSITELIB}/dnaio/readers.pyo ${PYSITELIB}/dnaio/readers.pyc ${PYSITELIB}/dnaio/writers.pyo ${PYSITELIB}/dnaio/writers.pyc d13 2 d16 3 d20 2 d23 3 d27 2 d30 2 @