head 1.4; access; symbols pkgsrc-2022Q2:1.3.0.82 pkgsrc-2022Q2-base:1.3 pkgsrc-2022Q1:1.3.0.80 pkgsrc-2022Q1-base:1.3 pkgsrc-2021Q4:1.3.0.78 pkgsrc-2021Q4-base:1.3 pkgsrc-2021Q3:1.3.0.76 pkgsrc-2021Q3-base:1.3 pkgsrc-2021Q2:1.3.0.74 pkgsrc-2021Q2-base:1.3 pkgsrc-2021Q1:1.3.0.72 pkgsrc-2021Q1-base:1.3 pkgsrc-2020Q4:1.3.0.70 pkgsrc-2020Q4-base:1.3 pkgsrc-2020Q3:1.3.0.68 pkgsrc-2020Q3-base:1.3 pkgsrc-2020Q2:1.3.0.64 pkgsrc-2020Q2-base:1.3 pkgsrc-2020Q1:1.3.0.44 pkgsrc-2020Q1-base:1.3 pkgsrc-2019Q4:1.3.0.66 pkgsrc-2019Q4-base:1.3 pkgsrc-2019Q3:1.3.0.62 pkgsrc-2019Q3-base:1.3 pkgsrc-2019Q2:1.3.0.60 pkgsrc-2019Q2-base:1.3 pkgsrc-2019Q1:1.3.0.58 pkgsrc-2019Q1-base:1.3 pkgsrc-2018Q4:1.3.0.56 pkgsrc-2018Q4-base:1.3 pkgsrc-2018Q3:1.3.0.54 pkgsrc-2018Q3-base:1.3 pkgsrc-2018Q2:1.3.0.52 pkgsrc-2018Q2-base:1.3 pkgsrc-2018Q1:1.3.0.50 pkgsrc-2018Q1-base:1.3 pkgsrc-2017Q4:1.3.0.48 pkgsrc-2017Q4-base:1.3 pkgsrc-2017Q3:1.3.0.46 pkgsrc-2017Q3-base:1.3 pkgsrc-2017Q2:1.3.0.42 pkgsrc-2017Q2-base:1.3 pkgsrc-2017Q1:1.3.0.40 pkgsrc-2017Q1-base:1.3 pkgsrc-2016Q4:1.3.0.38 pkgsrc-2016Q4-base:1.3 pkgsrc-2016Q3:1.3.0.36 pkgsrc-2016Q3-base:1.3 pkgsrc-2016Q2:1.3.0.34 pkgsrc-2016Q2-base:1.3 pkgsrc-2016Q1:1.3.0.32 pkgsrc-2016Q1-base:1.3 pkgsrc-2015Q4:1.3.0.30 pkgsrc-2015Q4-base:1.3 pkgsrc-2015Q3:1.3.0.28 pkgsrc-2015Q3-base:1.3 pkgsrc-2015Q2:1.3.0.26 pkgsrc-2015Q2-base:1.3 pkgsrc-2015Q1:1.3.0.24 pkgsrc-2015Q1-base:1.3 pkgsrc-2014Q4:1.3.0.22 pkgsrc-2014Q4-base:1.3 pkgsrc-2014Q3:1.3.0.20 pkgsrc-2014Q3-base:1.3 pkgsrc-2014Q2:1.3.0.18 pkgsrc-2014Q2-base:1.3 pkgsrc-2014Q1:1.3.0.16 pkgsrc-2014Q1-base:1.3 pkgsrc-2013Q4:1.3.0.14 pkgsrc-2013Q4-base:1.3 pkgsrc-2013Q3:1.3.0.12 pkgsrc-2013Q3-base:1.3 pkgsrc-2013Q2:1.3.0.10 pkgsrc-2013Q2-base:1.3 pkgsrc-2013Q1:1.3.0.8 pkgsrc-2013Q1-base:1.3 pkgsrc-2012Q4:1.3.0.6 pkgsrc-2012Q4-base:1.3 pkgsrc-2012Q3:1.3.0.4 pkgsrc-2012Q3-base:1.3 pkgsrc-2012Q2:1.3.0.2 pkgsrc-2012Q2-base:1.3 pkgsrc-2012Q1:1.2.0.12 pkgsrc-2012Q1-base:1.2 pkgsrc-2011Q4:1.2.0.10 pkgsrc-2011Q4-base:1.2 pkgsrc-2011Q3:1.2.0.8 pkgsrc-2011Q3-base:1.2 pkgsrc-2011Q2:1.2.0.6 pkgsrc-2011Q2-base:1.2 pkgsrc-2011Q1:1.2.0.4 pkgsrc-2011Q1-base:1.2 pkgsrc-2010Q4:1.2.0.2 pkgsrc-2010Q4-base:1.2 pkgsrc-2010Q3:1.1.1.1.0.8 pkgsrc-2010Q3-base:1.1.1.1 pkgsrc-2010Q2:1.1.1.1.0.6 pkgsrc-2010Q2-base:1.1.1.1 pkgsrc-2010Q1:1.1.1.1.0.4 pkgsrc-2010Q1-base:1.1.1.1 pkgsrc-2009Q4:1.1.1.1.0.2 pkgsrc-2009Q4-base:1.1.1.1 pkgsrc-base:1.1.1.1 TNF:1.1.1; locks; strict; comment @# @; 1.4 date 2022.08.25.22.09.14; author thor; state dead; branches; next 1.3; commitid q0pWYoF9katQfjRD; 1.3 date 2012.05.28.18.38.18; author asau; state Exp; branches; next 1.2; 1.2 date 2010.12.16.21.00.54; author asau; state Exp; branches; next 1.1; 1.1 date 2009.12.12.23.30.01; author asau; state Exp; branches 1.1.1.1; next ; 1.1.1.1 date 2009.12.12.23.30.01; author asau; state Exp; branches; next ; desc @@ 1.4 log @parallel/openmpi: update to 4.1.4 This is a long overdue update with some refinements, notably default-on f90 option. We skipped some major releases, so please excuse me not including the whole changelog. See https://open-mpi.org for more information. @ text @$NetBSD: patch-aa,v 1.3 2012/05/28 18:38:18 asau Exp $ Missing RPATH support. --- opal/tools/wrappers/opal_wrapper.c.orig 2011-12-14 05:43:59.000000000 +0400 +++ opal/tools/wrappers/opal_wrapper.c 2012-02-16 18:10:03.000000000 +0400 @@@@ -61,6 +61,7 @@@@ #else #define OPAL_INCLUDE_FLAG "-I" #define OPAL_LIBDIR_FLAG "-L" +#define OPAL_RPATH_FLAG "-R" #endif /* !defined(__WINDOWS__) && defined(_MSC_VER) */ struct options_data_t { @@@@ -363,6 +364,8 @@@@ #else asprintf(&line, OPAL_LIBDIR_FLAG"%s", options_data[parse_options_idx].path_libdir); + asprintf(&line, OPAL_RPATH_FLAG"%s", + options_data[parse_options_idx].path_libdir); #endif /* defined(__WINDOWS__) */ opal_argv_append_nosize(&options_data[parse_options_idx].link_flags, line); free(line); @ 1.3 log @Update to OpenMPI 1.5.5 Changes in 1.5.5 ---------------- - Many, many portability configure/build fixes courtesy of Paul Hargrove. Thanks, Paul! - Fixed shared memory fault tolerance support compiler errors. - Removed not-production-quality rshd and tmd PLM launchers. - Minor updates to the Open MPI SRPM spec file. - Fixed mpirun's --bind-to-socket option. - A few MPI_THREAD_MULTIPLE fixes in the shared memory BTL. - Upgrade the GNU Autotools used to bootstrap the 1.5/1.6 series to all the latest versions at the time of this release. - Categorically state in the README that if you're having a problem with Open MPI with the Linux Intel 12.1 compilers, *upgrade your Intel Compiler Suite to the latest patch version*, and the problems will go away. :-) - Fix the --without-memory-manager configure option. - Fixes for Totalview/DDT MPI-capable debuggers. - Update rsh/ssh support to properly handle the Mac OS X library path (i.e., DYLD_LIBRARY_PATH). - Make warning about shared memory backing files on a networked file system be optional (i.e., can be disabled via MCA parameter). - Several fixes to processor and memory affinity. - Various shared memory infrastructure improvements. - Various checkpoint/restart fixes. - Fix MPI_IN_PLACE (and other MPI sentinel values) on OS X. Thanks to Dave Goodell for providing the magic OS X gcc linker flags necessary. - Various man page corrections and typo fixes. Thanks to Fujitsu for the patch. - Updated wrapper compiler man pages to list the various --showme options that are available. - Add PMI direct-launch support (e.g., "srun mpi_application" under SLURM). - Correctly compute the aligned address when packing the datatype description. Thanks to Fujitsu for the patch. - Fix MPI obscure corner case handling in packing MPI datatypes. Thanks to Fujitsu for providing the patch. - Workaround an Intel compiler v12.1.0 2011.6.233 vector optimization bug. - Output the MPI API in ompi_info output. - Major VT update to 5.12.1.4. - Rankfile 'P'hysical mapping is no longer available. - Upgrade embedded Hardware Locality (hwloc) v1.3.2, plus some post-1.3.2-release bug fixes. All processor and memory binding is now done through hwloc. Woo hoo! Note that this fixes core binding on AMD Opteron 6200 and 4200 series-based systems (sometimes known as Interlagos, Valencia, or other Bulldozer-based chips). - New MCA parameters to control process-wide memory binding policy: hwloc_base_mem_alloc_policy, hwloc_base_mem_bind_failure_action (see ompi_info --param hwloc base). - Removed direct support for libnuma. Libnuma support may now be picked up through hwloc. - Added MPI_IN_PLACE support to MPI_EXSCAN. - Various fixes for building on Windows, including MinGW support. - Removed support for the OpenFabrics IBCM connection manager. - Updated Chelsio T4 and Intel NE OpenFabrics default buffer settings. - Increased the default RDMA CM timeout to 30 seconds. - Issue a warning if both btl_tcp_if_include and btl_tcp_if_exclude are specified. - Many fixes to the Mellanox MXM transport. @ text @d1 1 a1 1 $NetBSD: patch-aa,v 1.2 2010/12/16 21:00:54 asau Exp $ @ 1.2 log @Update to OpenMPI 1.5.1 Changes in 1.5.1 - Fixes for the Oracle Studio 12.2 Fortran compiler. - Fix SPARC and SPARCv9 atomics. Thanks to Nicola Stange for the initial patch. - Fix Libtool issues with the IBM XL compiler in 64-bit mode. - Restore the reset of the libevent progress counter to avoid over-sampling the event library. - Update memory barrier support. - Use memmove (instead of memcpy) when necessary (e.g., source and destination overlap). - Fixed ompi-top crash. - Fix to handle Autoconf --program-transforms properly and other m4/configury updates. Thanks to the GASNet project for the --program transforms fix. - Allow hostfiles to specify usernames on a per-host basis. - Update wrapper compiler scripts to search for perl during configure, per request from the BSD maintainers. - Minor man page fixes. - Added --with-libltdl option to allow building Open MPI with an external installation of libltdl. - Fixed various issues with -D_FORTIFY_SOURCE=2. - Various VT fixes and updates. Notable changes in 1.5 - Added "knem" support: direct process-to-process copying for shared memory message passing. See http://runtime.bordeaux.inria.fr/knem/ and the README file for more details. - Updated shared library versioning scheme and linking style of MPI applications. The MPI application ABI has been broken from the v1.3/v1.4 series. MPI applications compiled against any prior version of Open MPI will need to, at a minimum, re-link. See the README file for more details. - Added "fca" collective component, enabling MPI collective offload support for Voltaire switches. - Fixed MPI one-sided operations with large target displacements. Thanks to Brian Price and Jed Brown for reporting the issue. - Fixed MPI_GET_COUNT when used with large counts. Thanks to Jed Brown for reporting the issue. - Made the openib BTL safer if extremely low SRQ settings are used. - Fixed handling of the array_of_argv parameter in the Fortran binding of MPI_COMM_SPAWN_MULTIPLE (** also to appear: 1.4.3). - Fixed malloc(0) warnings in some collectives. - Fixed a problem with the Fortran binding for MPI_FILE_CREATE_ERRHANDLER. Thanks to Secretan Yves for identifying the issue (** also to appear: 1.4.3). - Updates to the LSF PLM to ensure that the path is correctly passed. Thanks to Teng Lin for the patch (** also to appear: 1.4.3). - Fixes for the F90 MPI_COMM_SET_ERRHANDLER and MPI_WIN_SET_ERRHANDLER bindings. Thanks to Paul Kapinos for pointing out the issue (** also to appear: 1.4.3). - Fixed extra_state parameter types in F90 prototypes for MPI_COMM_CREATE_KEYVAL, MPI_GREQUEST_START, MPI_REGISTER_DATAREP, MPI_TYPE_CREATE_KEYVAL, and MPI_WIN_CREATE_KEYVAL. - Fixes for Solaris oversubscription detection. - If the PML determines it can't reach a peer process, print a slightly more helpful message. Thanks to Nick Edmonds for the suggestion. - Make btl_openib_if_include/exclude function the same way btl_tcp_if_include/exclude works (i.e., supplying an _include list overrides supplying an _exclude list). - Apply more scalable reachability algorithm on platforms with more than 8 TCP interfaces. - Various assembly code updates for more modern platforms / compilers. - Relax restrictions on using certain kinds of MPI datatypes with one-sided operations. Users beware; not all MPI datatypes are valid for use with one-sided operations! - Improve behavior of MPI_COMM_SPAWN with regards to --bynode. - Various threading fixes in the openib BTL and other core pieces of Open MPI. - Various help file and man pages updates. - Various FreeBSD and NetBSD updates and fixes. Thanks to Kevin Buckley and Aleksej Saushev for their work. - Fix case where freeing communicators in MPI_FINALIZE could cause process failures. - Print warnings if shared memory state files are opened on what look like networked filesystems. - Update libevent to v1.4.13. - Allow propagating signals to processes that call fork(). - Fix bug where MPI_GATHER was sometimes incorrectly examining the datatype on non-root processes. Thanks to Michael Hofmann for investigating the issue. - Various Microsoft Windows fixes. - Various Catamount fixes. - Various checkpoint / restart fixes. - Xgrid support has been removed until it can be fixed (patches would be welcome). - Added simplistic "libompitrace" contrib package. Using the MPI profiling interface, it essentially prints out to stderr when select MPI functions are invoked. - Update bundled VampirTrace to v5.8.2. - Add pkg-config(1) configuration files for ompi, ompi-c, ompi-cxx, ompi-f77, ompi-f90. See the README for more details. - Removed the libopenmpi_malloc library (added in the v1.3 series) since it is no longer necessary - Add several notifier plugins (generally used when Open MPI detects system/network administrator-worthy problems); each have their own MCA parameters to govern their usage. See "ompi_info --param notifier " for more details. - command to execute arbitrary commands (e.g., run a script). - file to send output to a file. - ftb to send output to the Fault Tolerant Backplane (see http://wiki.mcs.anl.gov/cifts/index.php/CIFTS) - hnp to send the output to mpirun. - smtp (requires libesmtp) to send an email. @ text @d1 1 a1 1 $NetBSD$ d5 4 a8 4 --- opal/tools/wrappers/opal_wrapper.c.orig 2009-11-04 17:57:36.000000000 +0300 +++ opal/tools/wrappers/opal_wrapper.c 2010-01-12 20:48:26.000000000 +0300 @@@@ -58,6 +58,7 @@@@ #if !defined(__WINDOWS__) d12 4 a15 4 #else #define OPAL_INCLUDE_FLAG "/I" #define OPAL_LIBDIR_FLAG "/LIBPATH:" @@@@ -357,6 +358,8 @@@@ @ 1.1 log @Initial revision @ text @d5 3 a7 3 --- opal/tools/wrappers/opal_wrapper.c.orig 2008-08-25 23:16:48.000000000 +0400 +++ opal/tools/wrappers/opal_wrapper.c 2008-09-04 11:41:17.000000000 +0400 @@@@ -57,6 +57,7 @@@@ d15 1 a15 1 @@@@ -301,6 +302,8 @@@@ @ 1.1.1.1 log @Import OpenMPI 1.4 as parallel/openmpi. OpenMPI is open source MPI-2 implementation. @ text @@