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comment	@# @;


1.1
date	2024.12.04.13.38.32;	author bacon;	state Exp;
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commitid	FS8uGc4pFDD6HbAF;


desc
@@


1.1
log
@biology/fasttree: Phylogenetic trees from alignments

FastTree infers approximately-maximum-likelihood phylogenetic trees
from alignments of nucleotide or protein sequences. FastTree can
handle alignments with up to a million of sequences in a reasonable
amount of time and memory.
@
text
@# $NetBSD$

DISTNAME=	FastTree-2.1.11
CATEGORIES=	biology
MASTER_SITES=	http://www.microbesonline.org/fasttree/
EXTRACT_SUFX=	.c

MAINTAINER=	bacon@@NetBSD.org
HOMEPAGE=	http://www.microbesonline.org/fasttree/
COMMENT=	Approximately-maximum-likelihood phylogenetic trees from alignments
LICENSE=	gnu-gpl-v2

WRKSRC=		${WRKDIR}

.include "../../mk/bsd.prefs.mk"

# Xcode supports -Xpreprocessor -fopenmp, but does not supply OpenMP libs
.if ${OPSYS} == Darwin
SUBST_CLASSES+=		openmp
SUBST_SED.openmp=	-e 's|-fopenmp|-Xpreprocessor &|g'
SUBST_STAGE.openmp=	pre-configure
SUBST_FILES.openmp=	Makefile
LDFLAGS+= 		-L${PREFIX}/lib -lomp -lm
.include "../../parallel/openmp/buildlink3.mk"
.endif

do-extract:
	${CP} ${DISTDIR}/${DISTFILES} ${WRKSRC}
	${CP} ${FILESDIR}/Makefile ${WRKSRC}

.include "../../mk/bsd.pkg.mk"
@