head 1.20; access; symbols pkgsrc-2013Q2:1.20.0.20 pkgsrc-2013Q2-base:1.20 pkgsrc-2012Q4:1.20.0.18 pkgsrc-2012Q4-base:1.20 pkgsrc-2011Q4:1.20.0.16 pkgsrc-2011Q4-base:1.20 pkgsrc-2011Q2:1.20.0.14 pkgsrc-2011Q2-base:1.20 pkgsrc-2009Q4:1.20.0.12 pkgsrc-2009Q4-base:1.20 pkgsrc-2008Q4:1.20.0.10 pkgsrc-2008Q4-base:1.20 pkgsrc-2008Q3:1.20.0.8 pkgsrc-2008Q3-base:1.20 cube-native-xorg:1.20.0.6 cube-native-xorg-base:1.20 pkgsrc-2008Q2:1.20.0.4 pkgsrc-2008Q2-base:1.20 pkgsrc-2008Q1:1.20.0.2 pkgsrc-2008Q1-base:1.20 pkgsrc-2007Q4:1.18.0.2 pkgsrc-2007Q4-base:1.18 pkgsrc-2007Q3:1.17.0.6 pkgsrc-2007Q3-base:1.17 pkgsrc-2007Q2:1.17.0.4 pkgsrc-2007Q2-base:1.17 pkgsrc-2007Q1:1.17.0.2 pkgsrc-2007Q1-base:1.17 pkgsrc-2006Q4:1.16.0.6 pkgsrc-2006Q4-base:1.16 pkgsrc-2006Q3:1.16.0.4 pkgsrc-2006Q3-base:1.16 pkgsrc-2006Q2:1.16.0.2 pkgsrc-2006Q2-base:1.16 pkgsrc-2006Q1:1.15.0.8 pkgsrc-2006Q1-base:1.15 pkgsrc-2005Q4:1.15.0.6 pkgsrc-2005Q4-base:1.15 pkgsrc-2005Q3:1.15.0.4 pkgsrc-2005Q3-base:1.15 pkgsrc-2005Q2:1.15.0.2 pkgsrc-2005Q2-base:1.15 pkgsrc-2005Q1:1.14.0.4 pkgsrc-2005Q1-base:1.14 pkgsrc-2004Q4:1.14.0.2 pkgsrc-2004Q4-base:1.14 pkgsrc-2004Q3:1.13.0.4 pkgsrc-2004Q3-base:1.13 pkgsrc-2004Q2:1.13.0.2 pkgsrc-2004Q2-base:1.13 pkgsrc-2004Q1:1.12.0.2 pkgsrc-2004Q1-base:1.12 pkgsrc-2003Q4:1.10.0.4 pkgsrc-2003Q4-base:1.10 netbsd-1-6-1:1.10.0.2 netbsd-1-6-1-base:1.10 netbsd-1-6:1.8.0.6 netbsd-1-6-RELEASE-base:1.8 pkgviews:1.8.0.2 pkgviews-base:1.8 buildlink2:1.7.0.2 buildlink2-base:1.8 netbsd-1-5-PATCH003:1.7 netbsd-1-5-PATCH001:1.5 netbsd-1-5-RELEASE:1.5 netbsd-1-4-PATCH003:1.5 netbsd-1-4-PATCH002:1.2 comdex-fall-1999:1.2 netbsd-1-4-PATCH001:1.2 netbsd-1-4-RELEASE:1.1; locks; strict; comment @# @; 1.20 date 2008.03.15.22.16.41; author markd; state dead; branches; next 1.19; 1.19 date 2008.03.07.16.11.39; author jlam; state Exp; branches; next 1.18; 1.18 date 2007.11.03.20.14.40; author markd; state Exp; branches; next 1.17; 1.17 date 2007.03.14.11.50.35; author markd; state Exp; branches; next 1.16; 1.16 date 2006.06.13.12.28.09; author markd; state Exp; branches; next 1.15; 1.15 date 2005.05.02.16.57.19; author drochner; state Exp; branches; next 1.14; 1.14 date 2004.11.18.12.31.29; author markd; state Exp; branches; next 1.13; 1.13 date 2004.04.27.11.24.31; author markd; state Exp; branches; next 1.12; 1.12 date 2004.01.05.12.20.57; author markd; state Exp; branches; next 1.11; 1.11 date 2003.12.03.12.05.18; author markd; state Exp; branches; next 1.10; 1.10 date 2002.12.10.11.58.11; author markd; state Exp; branches; next 1.9; 1.9 date 2002.09.09.00.59.02; author markd; state Exp; branches; next 1.8; 1.8 date 2002.06.16.02.56.51; author dmcmahill; state Exp; branches; next 1.7; 1.7 date 2002.03.01.10.46.53; author markd; state Exp; branches 1.7.2.1; next 1.6; 1.6 date 2001.07.23.13.14.44; author jlam; state Exp; branches; next 1.5; 1.5 date 2000.08.16.19.04.43; author jlam; state Exp; branches; next 1.4; 1.4 date 2000.08.11.23.02.38; author jlam; state Exp; branches; next 1.3; 1.3 date 2000.04.19.15.30.06; author jlam; state Exp; branches; next 1.2; 1.2 date 99.05.25.23.45.06; author jlam; state Exp; branches; next 1.1; 1.1 date 98.12.21.10.29.40; author frueauf; state Exp; branches; next ; 1.7.2.1 date 2002.06.23.18.52.31; author jlam; state Exp; branches; next ; desc @@ 1.20 log @Update to R 2.6.2. Changes are basically bugfixes. pkgsrc changes: Don't bother patching configure.ac - it was only part of the changes being made to configure so don't pretend you could use it to regerate configure. Use -fPIC rather than -fpic for NetBSD powerpc. Should fix PR 38032. @ text @$NetBSD: patch-aa,v 1.19 2008/03/07 16:11:39 jlam Exp $ --- configure.ac.orig 2007-09-21 14:05:04.000000000 +1200 +++ configure.ac @@@@ -260,7 +260,7 @@@@ AC_ARG_ENABLE([BLAS-shlib], [use_blas_shlib="unset"]) if test "${want_R_shlib}" = yes; then - LIBR="-L\$(R_HOME)/lib\$(R_ARCH) -lR" + LIBR="-Wl,-R${prefix}/lib/R/lib\$(R_ARCH) -L\$(R_HOME)/lib\$(R_ARCH) -lR" else LIBR= fi @@@@ -817,13 +817,6 @@@@ case "${host_cpu}" in R_PROG_CC_FLAG([-ieee_with_inexact], R_SH_VAR_ADD(R_XTRA_CFLAGS, [-ieee_with_inexact])) fi - if test "${G77}" = yes; then - R_PROG_F77_FLAG([-mieee], - R_SH_VAR_ADD(R_XTRA_FFLAGS, [-mieee])) - else - R_PROG_F77_FLAG([-fpe3], - R_SH_VAR_ADD(R_XTRA_FFLAGS, [-fpe3])) - fi if test "${GXX}" = yes; then R_PROG_CXX_FLAG([-mieee], R_SH_VAR_ADD(R_XTRA_CXXFLAGS, [-mieee])) @@@@ -1380,6 +1373,7 @@@@ rm -f libconftest${DYLIB_EXT} conftest.c fcpicflags= ;; netbsd*) + fpicflags="-fPIC" if ${CPP} - -dM < /dev/null | grep __ELF__ >/dev/null ; then main_ldflags="-export-dynamic" shlib_ldflags="-shared" @ 1.19 log @+ Remove modifications to configure.in and configure in patch-aa and patch-ac that altered the order in which the terminal library for readline was detected. The termcap.buildlink3.mk file (included indirectly by readline/buildlink3.mk) will do the right thing by itself. + Modify the pkg-index.tmpl INSTALL script fragment: we can just use ${PKG_PREFIX} instead of substituting for @@PREFIX@@ everywhere. Also refactor the commands to rebuild the package index into a shell function and give some indication to the user what is happening. + Remove chown operation in post-install that was basically cargo-culted from the very first version of R imported into pkgsrc. It's not necessary. + Support user-destdir installation. Bump the PKGREVISION to 2. @ text @d1 1 a1 1 $NetBSD: patch-aa,v 1.18 2007/11/03 20:14:40 markd Exp $ @ 1.18 log @Update R to version 2.6.0 Many new features, changes and bug fixes. See lib/R/doc/NEWS for details. @ text @d1 1 a1 1 $NetBSD: patch-aa,v 1.17 2007/03/14 11:50:35 markd Exp $ a13 13 @@@@ -672,9 +672,9 @@@@ if test "${use_readline}" = yes; then if test "${use_readline}" = no; then ## only need ncurses if libreadline is not statically linked against it unset ac_cv_lib_readline_rl_callback_read_char - AC_CHECK_LIB(ncurses, main, [], - AC_CHECK_LIB(termcap, main, [], - AC_CHECK_LIB(termlib, main))) + AC_CHECK_LIB(termcap, main, [], + AC_CHECK_LIB(termlib, main, [], + AC_CHECK_LIB(ncurses, main))) AC_CHECK_LIB(readline, rl_callback_read_char) use_readline="${ac_cv_lib_readline_rl_callback_read_char}" fi @ 1.17 log @Update R to version 2.4.1. pkgsrc changes: no longer automatically generate the PLIST. use (de)install templates for handling updating the index files when adding/removing R packages. Changes 2.4.1 This is a maintenance release and fixes a number of mostly minor bugs. Changes 2.4.0 This release has many new features. One important aspect is that S4 classes now have their own internal type, and S4 method dispatch has been completely revised to using cached generic functions, giving substantial performance improvements. As a consequence, all packages depending on "methods" need to be reinstalled. @ text @d1 1 a1 1 $NetBSD: patch-aa,v 1.16 2006/06/13 12:28:09 markd Exp $ d3 1 a3 1 --- configure.ac.orig 2006-12-04 10:37:52.000000000 +1300 d5 1 a5 1 @@@@ -255,7 +255,7 @@@@ AC_ARG_ENABLE([BLAS-shlib], d14 1 a14 1 @@@@ -653,9 +653,9 @@@@ if test "${use_readline}" = yes; then d27 1 a27 1 @@@@ -798,13 +798,6 @@@@ case "${host_cpu}" in d41 2 a42 2 @@@@ -1327,6 +1320,7 @@@@ rm -f libconftest${DYLIB_EXT} conftest.c fpicflags= @ 1.16 log @Update to R 2.3.1 This version contains several minor fixups and removes a couple of bad bugs such as NA-handling of mean() for integer vectors. Changes 2.3.0 This version contains several changes and additions, mostly incremental. @ text @d1 1 a1 1 $NetBSD: patch-aa,v 1.15 2005/05/02 16:57:19 drochner Exp $ d3 1 a3 1 --- configure.ac.orig 2006-05-18 21:13:59.000000000 +1200 d5 3 a7 3 @@@@ -361,7 +361,7 @@@@ AC_ARG_WITH([valgrind-instrumentation], ## needs to come after GNOME AM_CONDITIONAL(WANT_R_SHLIB, [test "x${want_R_shlib}" = xyes]) d14 1 a14 1 @@@@ -628,9 +628,9 @@@@ if test "${use_readline}" = yes; then d27 1 a27 1 @@@@ -779,13 +779,6 @@@@ case "${host_cpu}" in d41 1 a41 1 @@@@ -1244,6 +1237,7 @@@@ case "${host_os}" in @ 1.15 log @update to 2.1.0 too many changes to list here ...still doesn't work within TEXmacs @ text @d1 1 a1 1 $NetBSD$ d3 1 a3 1 --- configure.ac.orig 2005-04-18 23:30:54.000000000 +0200 d5 1 a5 1 @@@@ -306,7 +306,7 @@@@ AC_ARG_WITH([pcre], d9 2 a10 2 - LIBR="-L\$(R_HOME)/lib -lR" + LIBR="-Wl,-R${prefix}/lib/R/lib -L\$(R_HOME)/lib -lR" d14 1 a14 1 @@@@ -536,9 +536,9 @@@@ if test "${use_readline}" = yes; then d27 1 a27 1 @@@@ -681,13 +681,6 @@@@ case "${host_cpu}" in d41 1 a41 1 @@@@ -986,6 +979,7 @@@@ case "${host_os}" in @ 1.14 log @Update R to 2.0.1 Changes 2.0.1: This is a maintenance version mainly to fix a number of minor bugs and issues. Some rather nasty bugs were Windows-specific. Changes 2.0.0: Many things have changed since 1.0. The R language has acquired namespaces, exception handling constructs, formal methods and classes, much improved garbage collection, generalized I/O via connection objects, and considerable improvements in the graphics area. The user workspace has been reorganized, and so has the set of packages that ship with R. Several "recommended packages" deemed indispensable in a statistical system are bundled. In addition, there has been a large number of more specific new functions, tweaks, and bugfixes. @ text @d1 1 a1 1 $NetBSD: patch-aa,v 1.13 2004/04/27 11:24:31 markd Exp $ d3 1 a3 1 --- configure.ac.orig 2004-09-17 23:20:14.000000000 +1200 d5 2 a6 2 @@@@ -171,7 +171,7 @@@@ AC_ARG_ENABLE([R-shlib], [want_R_shlib="${want_R_framework}"]) d14 14 a27 14 @@@@ -491,9 +491,9 @@@@ AC_SUBST(LIBM) ## AC_CHECK_LIBM computes LIBM but does not add to LIBS, hence we do ## the following as well. AC_CHECK_LIB(m, sin) -AC_CHECK_LIB(ncurses, main, [], - AC_CHECK_LIB(termcap, main, [], - AC_CHECK_LIB(termlib, main))) +AC_CHECK_LIB(termcap, main, [], + AC_CHECK_LIB(termlib, main, [], + AC_CHECK_LIB(ncurses, main))) case "${host_os}" in darwin*) AM_CONDITIONAL(BUILD_DLFCN_DARWIN, true) @@@@ -654,13 +654,6 @@@@ case "${host_cpu}" in d41 1 a41 1 @@@@ -958,6 +951,7 @@@@ case "${host_os}" in @ 1.13 log @Update R to 1.9.0 and buildlink3ify USER-VISIBLE CHANGES o Underscore '_' is now allowed in syntactically valid names, and make.names() no longer changes underscores. Very old code that makes use of underscore for assignment may now give confusing error messages. o Package 'base' has been split into packages 'base', 'graphics', 'stats' and 'utils'. All four are loaded in a default installation, but the separation allows a 'lean and mean' version of R to be used for tasks such as building indices. Packages ctest, eda, modreg, mva, nls, stepfun and ts have been merged into stats, and lqs has been returned to MASS. In all cases a stub has been left that will issue a warning and ensure that the appropriate new home is loaded. All the time series datasets have been moved to package stats. Sweave has been moved to utils. Package mle has been moved to stats4 which will become the central place for statistical S4 classes and methods distributed with base R. Package mle remains as a stub. Users may notice that code in .Rprofile is run with only the new base loaded and so functions may now not be found. For example, ps.options(horizontal = TRUE) should be preceded by library(graphics) or called as graphics::ps.options or, better, set as a hook -- see ?setHook. o There has been a concerted effort to speed up the startup of an R session: it now takes about 2/3rds of the time of 1.8.1. o A warning is issued at startup in a UTF-8 locale, as currently R only supports single-byte encodings. plus many new features and bug fixes. @ text @d1 1 a1 1 $NetBSD$ d3 1 a3 1 --- configure.ac.orig 2004-03-20 04:15:44.000000000 +1300 d9 2 a10 2 - LIBR="-L\$(R_HOME)/bin -lR" + LIBR="-Wl,-R${prefix}/lib/R/bin -L\$(R_HOME)/bin -lR" d14 1 a14 1 @@@@ -477,9 +477,9 @@@@ AC_SUBST(LIBM) d27 1 a27 1 @@@@ -634,13 +634,6 @@@@ case "${host_cpu}" in d41 1 a41 1 @@@@ -933,6 +926,7 @@@@ case "${host_os}" in @ 1.12 log @Reintroduce reordering tests for termcap vs termlib vs ncurses and make dependency on libbz2 explicit Fixes build on Solaris 8. @ text @d3 1 a3 1 --- configure.ac.orig 2003-09-17 11:01:04.000000000 +1200 d5 2 a6 2 @@@@ -134,7 +134,7 @@@@ AC_ARG_ENABLE([R-shlib], [want_R_shlib=no]) d14 1 a14 1 @@@@ -436,9 +436,9 @@@@ AC_SUBST(LIBM) d27 1 a27 1 @@@@ -592,13 +592,6 @@@@ case "${host_cpu}" in d41 1 a41 1 @@@@ -891,6 +884,7 @@@@ case "${host_os}" in @ 1.11 log @Update R to 1.8.1. Changes since 1.6.2 Many new features. Language changes. Additional standard package 'mle'. Some old features deprecated or defunct. Many many bug fixes. Update to 1.8.0 from Ray Brownrigg in private communication, cleaned up and updated to 1.8.1 by me. @ text @d14 13 @ 1.10 log @Update R to version 1.6.1. Pkgsrc changes: Now builds the libR.so and provides a buildlink2.mk for packages that want to use it. From suggestions from Kent Polk. Recommended library set is now included in the base package. Changes: CHANGES IN R VERSION 1.6.1 NEW FEATURES o Added a few "trivial and obviously missing" functions to tcltk: tkchooseDirectory, tkpopup, tkdialog, tkread o barplot() has a new argument `axis.lty', which if set to 1 allows the pre-1.6.0 behaviour of plotting the axis and tick marks for the categorical axis. (This was apparently not intentional, but axis() used to ignore lty=0.) The argument `border' is no longer ".NotYetUsed". CHANGES IN R VERSION 1.6.0 USER-VISIBLE CHANGES o The default colour palette now has "grey" instead of "white" in location 8. See palette(). o grid(nx) behaves differently (but the same as in R versions <= 0.64). NEW FEATURES o Preparations for name space support: o The objects created in the methods package to represent classes, generic functions, method definitions, and inheritance relations now themselves belong to true classes. In particular, the "classRepresentation" objects follow the description in "Programming with Data" (section 7.6). o Other additions and changes to the methods package: o New methods ([[, print, str) and extended plot() method (incl. logical `horiz') for "dendrogram" class. o sprintf() now checks the agreement between formats and object types, and handles special values (NA, Inf, ...) correctly. o chol() now uses a tolerance for non-positive-definiteness and so should give more consistent results across platforms. o New function agrep() for approximate (fuzzy) string matching. o help.search() can now use both approximate (fuzzy) and regular expression matching. By default, if the pattern to be matched consists of only alphanumeric characters, whitespace or a dash, approximate matching is used. o axis() has three new optional arguments `col', `lty', and `lwd' all for drawing the axis line and tick marks. o Function vcov() (formerly in MASS), a generic function to return the variance-covariance matrix of the parameter estimates of a fitted model. o duplicated() and unique() have methods for matrices and arrays (based on ideas from Jens Oehlschlgel). o Internally memory sizes and counts of cons cells are now stored in unsigned longs. This allows memory limits to be set and objects created in the range 2-4Gb on 32-bit platforms, and allows 64-bit platforms to use much larger amounts of memory. o Command-line flags to set memory can now use the suffix `G' for gigabytes. The setting of maximum vsize is now only limited by the platform's address space. o All warning and error messages are truncated to a length set by options(warning.length=), defaulting to 1000. (Previously most (but not quite all) were truncated at 8192 characters.) o [dpqr]gamma() check for shape parameter > 0. o as.POSIX[cl]t can now convert logical NAs. o All installed packages (even those shipped with R) are given a `Built' field in the DESCRIPTION file. o as.data.frame() now coerces logical matrices into logical columns (rather than factors). o [[<-.data.frame no longer coerces character replacement values to factor. This is consistent with using $ to replace and with S4. o library() attempts to detect improperly installed packages, so as from this version an installed package must have a DESCRIPTION file and that file must have been stamped with a `Built:' line (which was introduced in 1.2.0). Under Unix-alikes, the platform is checked against that used for installation. o print.factor() has new arguments `max.levels' (with a smart default) and `width'. print.ordered() is no longer needed. o RNGkind() has an additional option for normal random generators: "Inversion". o data.frame() recycles factors and "AsIs" objects as well as atomic vectors. o rect() accepts additional graphics parameters through a ... argument (in the same way as polygon). o strwidth/strheight() now coerce their first argument in exactly the same way text() does, so a wider range of inputs is allowed. o prompt()'s default and data.frame methods have a new 3rd argument `name' allowing them to used more easily in scripts and loops. o rgb() has a new `maxColorValue' argument, allowing r,g,b in [0,M], particularly in {0:255}, efficiently and non-error-prone. o summaryRprof() provides the functionality of R CMD Rprof in R code, though more slowly. o pdf() now uses PDF not R code for clipping, which ensures that partially visible text strings are (partially) shown. o Each R session uses a per-session temporary directory which is removed at normal termination. The directory name is given by the tempdir() function, and filenames returned by tempfile() will be within that directory. o help.start() on Unix now uses a .R subdirectory of the per-session temporary directory and not ~/.R. A side effect is that ~/.R is now never deleted by R. o cbind/rbind() used to ignore all zero-length vectors, an undocumented quirk for S-compatibility. This caused problems when combining zero-extent matrices and zero-length vectors, and now zero-length vectors are ignored unless the result would have zero rows/columns. o plot.spec(x) now also works for other x than AR and Pgram results. o New functions La.chol() and La.chol2inv() for Cholesky decomposition and inverse of positive definite matrices using Lapack. o Changes to the tcltk package o New function axTicks() returning tick mark locations like axis(). o grid() has a more sensible default behavior. Tick axis alignment only happens when no numbers of grid cells are specified. New arguments lwd and equilogs; nx/ny = NA for not drawing, see ?grid. o installed.packages() has a new argument `priority'. o termplot() uses factor levels rather than 1,2,3... for x-axis. o The trace() function has been robustified and a new function tracingState() added to turn tracing temporarily on and off. o New cophenetic() in "mva" as utility for hierarchical clustering. o p.adjust() has two new methods, 'Hommel' and 'FDR', contributed by Gordon Smyth . o stars() now has add and plot arguments. and lots of bug fixes. @ text @d3 1 a3 1 --- configure.ac.orig Mon Oct 21 22:27:50 2002 d5 1 a5 1 @@@@ -148,7 +148,7 @@@@ d14 1 a14 14 @@@@ -412,9 +412,9 @@@@ AC_SUBST(LIBM) ## AC_CHECK_LIBM computes LIBM but does not add to LIBS, hence we do ## the following as well. AC_CHECK_LIB(m, sin) -AC_CHECK_LIB(ncurses, main, [], - AC_CHECK_LIB(termcap, main, [], - AC_CHECK_LIB(termlib, main))) +AC_CHECK_LIB(termcap, main, [], + AC_CHECK_LIB(termlib, main, [], + AC_CHECK_LIB(ncurses, main))) AC_CHECK_LIB(dl, dlopen) ## Readline. @@@@ -555,13 +555,6 @@@@ case "${host_cpu}" in d16 1 a16 1 [R_XTRA_CFLAGS="${R_XTRA_CFLAGS} -ieee_with_inexact"]) d20 1 a20 1 - [R_XTRA_FFLAGS="${R_XTRA_FFLAGS} -mieee"]) d23 1 a23 1 - [R_XTRA_FFLAGS="${R_XTRA_FFLAGS} -fpe3"]) d27 2 a28 2 [R_XTRA_CXXFLAGS="${R_XTRA_CXXFLAGS} -mieee"]) @@@@ -821,6 +814,7 @@@@ case "${host_os}" in @ 1.9 log @Update R to 1.5.1, switch to buildlink2, change maintainer. User-Visible Changes o XDR support is now guaranteed to be available, so the default save format will always be XDR binary files, and it is safe to distribute data in that format. (We are unaware of any platform that did not support XDR in recent versions of R.) gzfile() is guaranteed to be available, so the preferred method to distribute sizeable data objects is now via save(compress = TRUE). o pie() replaces piechart() and defaults to using pastel colours. o formatC has new arguments (see below) and formatC(*, d = ) is no longer valid and must be written as formatC(*, digits = ). o Missingness of character strings is treated much more consistently, and the character string "NA" can be used as a non-missing value. o summary.factor() now uses a stable sort, so the output will change where there are ties in the frequencies. Plus lots of new features and many bug fixes. @ text @d3 12 a14 3 --- configure.ac.orig Wed May 1 06:04:05 2002 +++ configure.ac Sun Sep 8 23:47:11 2002 @@@@ -414,9 +414,9 @@@@ d27 1 a27 1 @@@@ -555,13 +555,6 @@@@ d41 1 a41 1 @@@@ -816,6 +809,7 @@@@ d46 1 a46 1 if ${CPP} - -dM < /dev/null | grep -q __ELF__; then @ 1.8 log @don't key off of `alpha' to decide to do OSF specific things (-fpe3 flag to the fortran compiler). Also mark as not for older netbsd-alpha systems as this is an IEEE-754 infected program (hi ross!). @ text @d3 12 a14 13 --- configure.in.orig Thu Dec 13 10:16:03 2001 +++ configure.in @@@@ -426,9 +426,9 @@@@ if ${use_libmoto}; then AC_CHECK_LIB(moto, sin) fi -AC_CHECK_LIB(ncurses, main,, - AC_CHECK_LIB(termcap, main,, - AC_CHECK_LIB(termlib, main) +AC_CHECK_LIB(termcap, main,, + AC_CHECK_LIB(termlib, main,, + AC_CHECK_LIB(ncurses, main) )) d17 4 a20 3 @@@@ -553,11 +553,7 @@@@ R_PROG_CC_FLAG(-std1, R_XTRA_CFLAGS="${R_XTRA_CFLAGS} -std1") d23 2 a24 1 - R_XTRA_FFLAGS="${R_XTRA_FFLAGS} -mieee" d26 2 a27 1 - R_XTRA_FFLAGS="${R_XTRA_FFLAGS} -fpe3" d29 5 a33 6 + R_XTRA_FFLAGS="${R_XTRA_FFLAGS}" ## ## ;; @@@@ -776,6 +772,7 @@@@ main_ldflags="-export-dynamic" @ 1.7 log @Update to version 1.4.1 from PR pkg/15757 by Ray Brownrigg with minor mods by me. Changes and bug fixes from 1.3.1 are numerous. See the NEWS file in the distribution for details. @ text @d3 1 a3 1 --- configure.in.orig Fri Dec 14 04:16:03 2001 d18 14 a31 1 @@@@ -776,6 +776,7 @@@@ @ 1.7.2.1 log @Merge from pkgsrc-current to buildlink2 branch. @ text @d1 1 a1 1 $NetBSD: patch-aa,v 1.8 2002/06/16 02:56:51 dmcmahill Exp $ d3 1 a3 1 --- configure.in.orig Thu Dec 13 10:16:03 2001 d18 1 a18 14 @@@@ -553,11 +553,7 @@@@ R_PROG_CC_FLAG(-std1, R_XTRA_CFLAGS="${R_XTRA_CFLAGS} -std1") fi - if test "${G77}" = yes; then - R_XTRA_FFLAGS="${R_XTRA_FFLAGS} -mieee" - else - R_XTRA_FFLAGS="${R_XTRA_FFLAGS} -fpe3" - fi + R_XTRA_FFLAGS="${R_XTRA_FFLAGS}" ## ## ;; @@@@ -776,6 +772,7 @@@@ @ 1.6 log @Update R to 1.3.0. This is a two-generation upgrade from the previous 1.1.1 version in pkgsrc. There are many, many bugfixes, better compliance with S3/S4, and many additional statistical analysis functions added to the base library. There is also an improved (faster) garbage collector and support for dynamically sizing the memory used by R. The full summary of changes may be found on the R Project website. @ text @d3 1 a3 1 --- configure.in.orig Sun Jun 17 12:41:20 2001 d5 1 a5 1 @@@@ -380,9 +380,9 @@@@ d17 9 a25 1 AC_CHECK_LIB(z, main) @ 1.5 log @Update R to 1.1.1. This is primarily a bugfix release from version 1.1.0, particularly fixing the table editor, but also contains a few additions: o data(), example() and help() now search the loaded packages, then in their .lib.loc argument, the latter as pre-0.99.0. See their help pages for the precise details. o help() has a new argument `try.all.packages' set by the option "help.try.all.packages". If help is not found in the normal path and this is TRUE then a search is made of all packages for possible matches. o prop.trend.test() - test for trend in proportions. o write.table() has new argument `dec' for setting the decimal separator (SPSS/Windows and probably others want commas in continental European locales). o Advance warning: save(, oldstyle=TRUE) will no longer be available after this release. o Symbols can now be coerced to expressions, making as.expression(quote(a)) work @ text @d3 3 a5 3 --- configure.in.orig Sun Jul 30 18:46:45 2000 +++ configure.in Wed Aug 16 13:56:09 2000 @@@@ -321,10 +321,6 @@@@ d12 4 a15 1 -)) a17 1 @ 1.4 log @Update R to 1.1.0. Many additions and bug-fixes from 1.1.0 make this a more usable replacement for S/S-PLUS. @ text @d3 3 a5 3 --- configure.in.orig Wed Jun 14 16:51:52 2000 +++ configure.in Fri Aug 11 18:26:41 2000 @@@@ -362,10 +362,6 @@@@ @ 1.3 log @Update to R-1.0.1. Move R library tree to ${PREFIX}/lib (a la perl5) since it contains loadable shared object files that are platform-specific. Lots of bug-fixes and additions ... it's getting closer to a usable replacement for S-PLUS. @ text @d3 13 a15 10 --- Makeconf.in.orig Sat Jan 22 15:10:00 2000 +++ Makeconf.in Mon Apr 17 16:04:58 2000 @@@@ -23,6 +23,7 @@@@ INSTALL = @@INSTALL@@ INSTALL_DATA = @@INSTALL_DATA@@ INSTALL_PROGRAM = @@INSTALL_PROGRAM@@ +INSTALL_SCRIPT = @@INSTALL_SCRIPT@@ INSTALL_DIR = ${INSTALL} -d LATEX = @@LATEX@@ LDCMD = @@LDCMD@@ @ 1.2 log @Updated R to 0.64.1. Too many changes from 0.62.1 to enumerate. See NEWS file in distribution. @ text @d3 3 a5 3 --- Makeconf.in.orig Tue Feb 2 19:16:51 1999 +++ Makeconf.in Tue May 25 02:52:48 1999 @@@@ -20,6 +20,7 @@@@ a12 6 @@@@ -53,4 +54,4 @@@@ libdir = @@libdir@@ mandir = @@mandir@@ -rhome = @@libdir@@/R +rhome = @@datadir@@/R @ 1.1 log @Update R to 0.63.1, provided in pr 6618 by Johnny C. Lam. Changes since 0.63.0 are mostly bigfixes and patches that make it actually work properly with NetBSD. @ text @d3 11 a13 3 --- Makeconf.in.orig Mon Nov 23 04:20:11 1998 +++ Makeconf.in Sun Dec 20 12:12:22 1998 @@@@ -50,4 +50,4 @@@@ @