head 1.18; access; symbols pkgsrc-2026Q2:1.16.0.6 pkgsrc-2026Q2-base:1.16 pkgsrc-2026Q1:1.16.0.4 pkgsrc-2026Q1-base:1.16 pkgsrc-2025Q4:1.16.0.2 pkgsrc-2025Q4-base:1.16 pkgsrc-2025Q3:1.14.0.4 pkgsrc-2025Q3-base:1.14 pkgsrc-2025Q2:1.14.0.2 pkgsrc-2025Q2-base:1.14 pkgsrc-2025Q1:1.13.0.4 pkgsrc-2025Q1-base:1.13 pkgsrc-2024Q4:1.13.0.2 pkgsrc-2024Q4-base:1.13 pkgsrc-2024Q3:1.11.0.2 pkgsrc-2024Q3-base:1.11 pkgsrc-2024Q2:1.10.0.2 pkgsrc-2024Q2-base:1.10 pkgsrc-2024Q1:1.9.0.2 pkgsrc-2024Q1-base:1.9 pkgsrc-2023Q4:1.7.0.4 pkgsrc-2023Q4-base:1.7 pkgsrc-2023Q3:1.7.0.2 pkgsrc-2023Q3-base:1.7 pkgsrc-2023Q2:1.5.0.6 pkgsrc-2023Q2-base:1.5 pkgsrc-2023Q1:1.5.0.4 pkgsrc-2023Q1-base:1.5 pkgsrc-2022Q4:1.5.0.2 pkgsrc-2022Q4-base:1.5 pkgsrc-2022Q3:1.4.0.4 pkgsrc-2022Q3-base:1.4 pkgsrc-2022Q2:1.4.0.2 pkgsrc-2022Q2-base:1.4 pkgsrc-2022Q1:1.3.0.2 pkgsrc-2022Q1-base:1.3 pkgsrc-2021Q4:1.1.0.10 pkgsrc-2021Q4-base:1.1 pkgsrc-2021Q3:1.1.0.8 pkgsrc-2021Q3-base:1.1 pkgsrc-2021Q2:1.1.0.6 pkgsrc-2021Q2-base:1.1 pkgsrc-2021Q1:1.1.0.4 pkgsrc-2021Q1-base:1.1 pkgsrc-2020Q4:1.1.0.2 pkgsrc-2020Q4-base:1.1; locks; strict; comment @# @; 1.18 date 2026.09.03.11.10.45; author adam; state Exp; branches; next 1.17; commitid vlhEZm4du0FImaUG; 1.17 date 2026.06.28.15.41.30; author wiz; state Exp; branches; next 1.16; commitid hjtQh9zHnnKc1ALG; 1.16 date 2025.11.13.12.28.35; author adam; state Exp; branches; next 1.15; commitid 70TfH3ZlLcIufoiG; 1.15 date 2025.10.09.07.57.48; author wiz; state Exp; branches; next 1.14; commitid t4nMY0Dt3rBjSRdG; 1.14 date 2025.04.16.11.19.25; author adam; state Exp; branches; next 1.13; commitid ZDLedf9l7X8lEgRF; 1.13 date 2024.11.11.07.28.42; author wiz; state Exp; branches; next 1.12; commitid 1fBDq3LwS98NncxF; 1.12 date 2024.10.14.06.45.50; author wiz; state Exp; branches; next 1.11; commitid ynDJEEQamKd33BtF; 1.11 date 2024.08.07.16.12.49; author jperkin; state Exp; branches; next 1.10; commitid a17uWooWFABfnUkF; 1.10 date 2024.05.18.13.37.34; author wiz; state Exp; branches; next 1.9; commitid 0gnFjOKEC3tp7uaF; 1.9 date 2024.02.15.22.15.05; author wiz; state Exp; branches; next 1.8; commitid hnGkJ9aizrwjYzYE; 1.8 date 2024.02.15.22.02.20; author wiz; state Exp; branches; next 1.7; commitid FKqFooYlfN6XTzYE; 1.7 date 2023.08.01.23.20.48; author wiz; state Exp; branches; next 1.6; commitid lyjXpsSeA6xpH8zE; 1.6 date 2023.07.03.17.30.58; author wiz; state Exp; branches; next 1.5; commitid zXGpkI8znnchHnvE; 1.5 date 2022.11.14.22.18.36; author wiz; state Exp; branches; next 1.4; commitid fr1tzu3vRHXdII1E; 1.4 date 2022.04.10.14.42.18; author nia; state Exp; branches; next 1.3; commitid WPw7wqCOsEp4cFzD; 1.3 date 2022.01.04.20.54.15; author wiz; state Exp; branches; next 1.2; commitid CYyhdK9qtoffkmnD; 1.2 date 2021.12.30.13.05.37; author adam; state Exp; branches; next 1.1; commitid w23rFuQ4pTWhUFmD; 1.1 date 2020.12.19.14.56.04; author mef; state Exp; branches; next ; commitid c1pAvYOk6ZHzBmAC; desc @@ 1.18 log @py-photutils: updated to 3.0.0 3.0.0 (2026-04-17) General - The minimum required NumPy is now 2.0. - The minimum required SciPy is now 1.13. - The minimum required Matplotlib is now 3.9. - The minimum required scikit-image is now 0.23. - The minimum required astropy is now 6.1.4. New Features - ``photutils.aperture`` - The ``to_sky`` and ``to_pixel`` methods for all pixel and sky aperture types now use the local WCS Jacobian to accurately compute pixel scale factors and rotation angles. This correctly handles WCS with distortions (e.g., SIP polynomial corrections) and non-square pixels. - ``photutils.background`` - Added a ``to_aperture`` method to ``LocalBackground``. - ``photutils.centroids`` - Added a ``CentroidQuadratic`` class to provide an object-oriented interface to the ``centroid_quadratic`` function. - ``photutils.detection`` - Added a public ``StarFinderCatalogBase`` class that provides a common base for the catalogs in the ``DAOStarFinder``, ``IRAFStarFinder``, and ``StarFinder`` classes. - Added ``__repr__`` and ``__str__`` methods to ``DAOStarFinder``, ``IRAFStarFinder``, and ``StarFinder``. - Significantly improved the performance of ``DAOStarFinder``, ``IRAFStarFinder``, and ``StarFinder`` by vectorizing cutout extraction and image moment computation. - The ``threshold`` parameter in ``DAOStarFinder``, ``IRAFStarFinder``, and ``StarFinder`` now accepts a 2D array in addition to a scalar value, allowing for spatially varying detection thresholds. - Added a ``scale_threshold`` parameter to ``DAOStarFinder``. When set to `False`, the input ``threshold`` is applied directly to the convolved data without the default kernel-based scaling. - Added a ``min_separation`` keyword to ``find_peaks``. The implementation uses fast separable box filters and is approximately 10-400x faster than using an explicit circular footprint with ``scipy.ndimage.maximum_filter`` (depending on the radius), while producing identical results. - ``photutils.profiles`` - Added a ``EnsquaredCurveOfGrowth`` class to compute a curve of growth using concentric square apertures. - Added a ``EllipticalCurveOfGrowth`` class to compute a curve of growth using concentric elliptical apertures with a fixed axis ratio and orientation. - Added ``moffat_fit``, ``moffat_profile``, and ``moffat_fwhm`` properties to ``RadialProfile`` for fitting a 1D Moffat model to the radial profile. - ``photutils.psf`` - Added a ``SourceGroups`` class that stores the results of grouping sources and provides methods to analyze and plot the groupings. - Added ``remove_invalid`` and ``reset_ids`` keywords to the ``results_to_init_params`` and ``results_to_model_params`` methods of ``PSFPhotometry`` and ``IterativePSFPhotometry``. - Added a ``decode_flags`` convenience method to ``PSFPhotometry`` and ``IterativePSFPhotometry`` classes to decode the bitwise flags from the results table. - Added a ``return_bit_flags`` keyword to the ``decode_psf_flags`` function. - Added ``__repr__`` methods to ``ImagePSF`` and ``GriddedPSFModel``. - Added a ``shape`` property to ``ImagePSF``. - ``EPSFBuilder`` now automatically excludes stars that repeatedly fail fitting and emits warnings with specific failure reasons. - Added validation and automatic shape handling for ``fit_shape=None`` in ``fit_2dgaussian`` and ``fit_fwhm``. The functions now require explicit ``fit_shape`` for multiple sources and emit an informative warning for single-source fitting. - The ``fit_fwhm`` and ``fit_2dgaussian`` ``xypos`` value can now be input as a ``zip`` object. - ``photutils.psf_matching`` - Added a ``regularization`` keyword to ``make_kernel`` to regularize division by near-zero values in the source Optical Transfer Function. - Added ``make_wiener_kernel`` function that uses Wiener regularization to make a PSF matching kernel. - ``make_kernel`` now validates input PSFs (2D, odd dimensions, centered) and the window function output. - ``resize_psf`` now validates input PSFs and pixel scales. - Added ``__repr__`` methods to ``CosineBellWindow``, ``HanningWindow``, ``SplitCosineBellWindow``, ``TopHatWindow``, and ``TukeyWindow`` classes. - ``photutils.segmentation`` - The ``SourceCatalog`` ``fluxfrac_radius`` now caches results by ``fluxfrac`` value. Repeated calls with the same ``fluxfrac`` return the cached result without recomputation. - The radial step used when searching for a bracketing interval in ``SourceCatalog`` ``fluxfrac_radius`` is now set to 10% of the current ``max_radius``, bounding the fallback loop to at most ~10 iterations regardless of source size. - Improved the performance (~6-9x speedup) of ``SourceCatalog`` ``min_value``, ``max_value``, ``segment_flux``, ``segment_flux_err``, ``background_sum``, and ``background_mean``. - Added ``SegmentationImage`` ``get_segment`` and ``get_segments`` methods to return the ``Segment`` object(s) for a given label or list of labels. - Added the ability to input ``RegionVisual`` keywords to the ``SegmentationImage`` ``to_regions`` method. - Added ``SegmentationImage`` ``get_polygon``, ``get_polygons``, ``get_patch``, ``get_patches``, ``get_region``, and ``get_regions`` methods to return the polygon, patch, or region for a given segment label or list of labels. - Improved the performance of the ``SegmentationImage`` ``keep_labels`` method and ``missing_labels`` attribute. - Improved the performance of ``SourceCatalog`` ``centroid_win`` (~3.5x speedup), ``centroid_quad``, ``fluxfrac_radius`` (~6x speedup), ``kron_radius`` (~2x speedup), ``moments``, ``moments_central``, ``perimeter``, and Kron photometry. - ``photutils.utils`` - Significantly improved the performance (by factors of 3 or more) of ``ShepardIDWInterpolator`` - Added a ``use_future_column_names`` context manager for temporarily enabling future column names in a scoped, thread-safe, and async-safe way without modifying the global ``photutils.future_column_names`` flag. @ text @# $NetBSD: Makefile,v 1.17 2026/06/28 15:41:30 wiz Exp $ DISTNAME= photutils-3.0.0 PKGNAME= ${PYPKGPREFIX}-${DISTNAME} CATEGORIES= math python MASTER_SITES= ${MASTER_SITE_PYPI:=p/photutils/} MAINTAINER= pkgsrc-users@@NetBSD.org HOMEPAGE= https://photutils.readthedocs.io/ COMMENT= Astropy coordinated module for astronomical photometry LICENSE= modified-bsd TOOL_DEPENDS+= ${PYPKGPREFIX}-cython>=3.1.2:../../devel/py-cython TOOL_DEPENDS+= ${PYPKGPREFIX}-extension-helpers>=1.3:../../devel/py-extension-helpers TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools>=78:../../devel/py-setuptools TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools_scm>=8.1:../../devel/py-setuptools_scm DEPENDS+= ${PYPKGPREFIX}-astropy>=6.1.4:../../math/py-astropy DEPENDS+= ${PYPKGPREFIX}-scipy>=1.13:../../math/py-scipy PYTHON_VERSIONS_INCOMPATIBLE= 310 311 .include "../../lang/python/wheel.mk" .include "../../math/py-numpy/buildlink3.mk" .include "../../mk/bsd.pkg.mk" @ 1.17 log @*: limit Python versions due to py-numpy dropping Python 3.11 support @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.16 2025/11/13 12:28:35 adam Exp $ d3 1 a3 1 DISTNAME= photutils-2.3.0 d13 1 a13 1 TOOL_DEPENDS+= ${PYPKGPREFIX}-cython>=3.0.0:../../devel/py-cython d16 3 a18 4 TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools_scm>=6.2:../../devel/py-setuptools_scm DEPENDS+= ${PYPKGPREFIX}-astropy>=5.3:../../math/py-astropy DEPENDS+= ${PYPKGPREFIX}-extension-helpers>=0.1:../../devel/py-extension-helpers DEPENDS+= ${PYPKGPREFIX}-scipy>=1.11.1:../../math/py-scipy @ 1.16 log @py-photutils: updated to 2.3.0 2.3.0 (2025-09-15) General - The minimum required NumPy is now 1.25. - The minimum required SciPy is now 1.11.1. - The minimum required Matplotlib is now 3.8. - The minimum required scikit-image is now 0.21. New Features - ``photutils.isophote`` - ``build_ellipse_model`` is now Cythonized and considerably faster. - ``build_ellipse_model`` also has an additional optional keyword argument ``sma_interval``, which was previously hardcoded. - ``photutils.psf`` - ``PSFPhotometry`` and ``IterativePSFPhotometry`` now raise an error if the input ``error`` array contains non-finite or zero values. - ``GriddedPSFModel`` can now be used with a single input ePSF model, which will be equivalent to ``ImagePSF``. - The ``finder`` callable input to ``PSFPhotometry`` and ``IterativePSFPhotometry`` is no longer restricted to have x and y column names of ``'xcentroid'`` and ``'ycentroid'``. The allowed column names are now the same as those allowed in the ``init_params`` table. - Added a ``group_warning_threshold`` keyword to ``PSFPhotometry`` and ``IterativePSFPhotometry``. - The ``PSFPhotometry`` and ``IterativePSFPhotometry`` classes no longer fail for invalid sources, defined as those that have no overlap with the input data, are completely masked, or have too few unmasked pixels for a fit. These classes have new flags (64, 128, 256, respectively) for these invalid conditions. - The ``PSFPhotometry`` and ``IterativePSFPhotometry`` classes have new ``results_to_init_params`` and ``results_to_model_params`` methods for outputting fit results in different formats. - When using Astropy 7.0+, the ``PSFPhotometry`` and ``IterativePSFPhotometry`` ``fitter`` object now modifies the PSF model in place instead of creating a copy, improving performance and significantly reducing memory usage in some cases. - ``PSFPhotometry`` and ``IterativePSFPhotometry`` now return a reduced chi-squared statistic (``reduced_chi2`` column in the results table). - The PSF photometry classes now use a dynamically generated "flat" model instead of a compound model for grouped sources. This eliminates recursion limits and significantly reduces memory usage for large groups. - ``photutils.segmentation`` - An optional ``array`` keyword was added to the ``SourceCatalog`` ``make_cutouts`` method. - Added a ``group`` keyword to the ``SegmentationImage`` ``to_regions`` method. - Added a ``decode_psf_flags`` utility function for decoding PSF photometry bit flags. - Added a ``PSF_FLAGS`` object to hold all PSF photometry bit flags in one place. PSF_FLAGS provides readable, named constants for each bit flag and helper utilities for decoding bit flags. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.15 2025/10/09 07:57:48 wiz Exp $ d21 1 a21 1 PYTHON_VERSIONS_INCOMPATIBLE= 310 @ 1.15 log @*: remove reference to (removed) Python 3.9 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.14 2025/04/16 11:19:25 adam Exp $ d3 1 a3 1 DISTNAME= photutils-2.2.0 d14 1 a14 1 TOOL_DEPENDS+= ${PYPKGPREFIX}-extension-helpers>=1:../../devel/py-extension-helpers d19 1 a19 2 DEPENDS+= ${PYPKGPREFIX}-gwcs>=0.12:../../math/py-gwcs DEPENDS+= ${PYPKGPREFIX}-scipy>=1.10:../../math/py-scipy @ 1.14 log @py-photutils: updated to 2.2.0 2.2.0 (2025-02-18) New Features - ``photutils.aperture`` - Add an ``aperture_to_region`` function to convert an Aperture object to an astropy ``Region`` or ``Regions`` object. - ``photutils.profiles`` - Added ``data_radius`` and ``data_profile`` attributes to the ``RadialProfile`` class for calculating the raw radial profile. - ``photutils.segmentation`` - Added a ``to_regions`` method to ``SegmentationImage`` that converts the segment outlines to a ``regions.Regions`` object. Bug Fixes - ``photutils.segmentation`` - Fixed an issue where the ``SegmentationImage`` ``polygons`` attribute would raise an error if any source segment contained a hole. API Changes - ``photutils.aperture`` - The ``theta`` attribute of ``EllipticalAperture``, ``EllipticalAnnulus``, ``RectangularAperture``, and ``RectangularAnnulus`` is now always returned as an angular ``Quantity``. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.13 2024/11/11 07:28:42 wiz Exp $ d22 1 a22 1 PYTHON_VERSIONS_INCOMPATIBLE= 39 310 @ 1.13 log @py-*: remove unused tool dependency py-setuptools includes the py-wheel functionality nowadays @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.12 2024/10/14 06:45:50 wiz Exp $ d3 1 a3 1 DISTNAME= photutils-1.0.1 a4 1 PKGREVISION= 2 d9 1 a9 1 HOMEPAGE= https://photutils.readthedocs.io/en/stable/ d13 5 a17 5 TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools>=0:../../devel/py-setuptools TOOL_DEPENDS+= ${PYPKGPREFIX}-setuptools_scm>=0:../../devel/py-setuptools_scm DEPENDS+= ${PYPKGPREFIX}-scikit-image>=0.14.2:../../math/py-scikit-image DEPENDS+= ${PYPKGPREFIX}-scikit-learn>=0.19:../../math/py-scikit-learn DEPENDS+= ${PYPKGPREFIX}-astropy>=4.2:../../math/py-astropy d20 1 d22 1 a22 1 PYTHON_VERSIONS_INCOMPATIBLE+= 39 # py-scikit-learn py-scikit-image ... @ 1.12 log @*: clean-up after python38 removal @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.11 2024/08/07 16:12:49 jperkin Exp $ a15 1 TOOL_DEPENDS+= ${PYPKGPREFIX}-wheel>=0:../../devel/py-wheel @ 1.11 log @py-photutils: Not for python39. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.10 2024/05/18 13:37:34 wiz Exp $ a22 2 PYTHON_VERSIONS_INCOMPATIBLE= 27 # py-scikit PYTHON_VERSIONS_INCOMPATIBLE+= 38 # py-scikit-learn @ 1.10 log @py-photutils: convert to wheel.mk. Add missing tool dependency while here. Bump PKGREVISION. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.9 2024/02/15 22:15:05 wiz Exp $ d25 1 @ 1.9 log @py-photutils: allow Python 3.11/3.12 now that py-scikit-image supports them @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.8 2024/02/15 22:02:20 wiz Exp $ d5 1 a5 1 PKGREVISION= 1 d14 3 d26 1 a26 1 .include "../../lang/python/egg.mk" @ 1.8 log @py-scikit-image: current version doesn't support Python 3.12 either @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.7 2023/08/01 23:20:48 wiz Exp $ a21 1 PYTHON_VERSIONS_INCOMPATIBLE+= 311 312 # py-scikit-image @ 1.7 log @*: remove more references to Python 3.7 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.6 2023/07/03 17:30:58 wiz Exp $ d22 1 a22 1 PYTHON_VERSIONS_INCOMPATIBLE+= 311 # py-scikit-image @ 1.6 log @py-photutils: mark as not for Python 3.8 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.5 2022/11/14 22:18:36 wiz Exp $ d20 1 a20 1 PYTHON_VERSIONS_INCOMPATIBLE= 27 37 # py-scikit @ 1.5 log @py-photutils: does not support python 3.11 because of py-scikit-image @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.4 2022/04/10 14:42:18 nia Exp $ d21 1 @ 1.4 log @Paper over tree breakage caused by unresolvable Python deps from scikit/pandas/numpy. @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.3 2022/01/04 20:54:15 wiz Exp $ a13 2 PYTHON_VERSIONS_INCOMPATIBLE= 27 37 # py-scikit d20 3 @ 1.3 log @*: bump PKGREVISION for egg.mk users They now have a tool dependency on py-setuptools instead of a DEPENDS @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.2 2021/12/30 13:05:37 adam Exp $ d14 1 a14 1 PYTHON_VERSIONS_INCOMPATIBLE= 27 @ 1.2 log @Forget about Python 3.6 @ text @d1 1 a1 1 # $NetBSD: Makefile,v 1.1 2020/12/19 14:56:04 mef Exp $ d5 1 @ 1.1 log @(math/py-photutils) import py38-photutils-1.0.1 Based on PR pkg/55873 by Daisuke Kinoshita: Photutils is an Astropy coordinated Python module for astronomical photometry. @ text @d1 1 a1 1 # $NetBSD$ d13 1 a13 2 PYTHON_VERSIONS_INCOMPATIBLE+= 27 PYTHON_VERSIONS_INCOMPATIBLE+= 36 @